Publications

Adverse Outcome Pathways

Use of Genetic Manipulation for Evaluating and Understanding Adverse Outcome Pathways.

Warner C., Garcia-Reyero N., Perkins E. (2018) In: Garcia-Reyero N., Murphy C. (eds) A Systems Biology Approach to Advancing Adverse Outcome Pathways for Risk Assessment. Springer.

Ionotropic GABA receptor antagonism-induced adverse outcome pathways for potential neurotoxicity biomarkers

Gong P., Hong H., and Perkins E.J. (2015) Biomarkers in Medicine 9(11): 1225-1239

Genomics

A comparative study of K-mer-spectrum based error correction methods for next-generation sequencing data analysis.

Akogwu I., Wang N., Zhang C.-Y., and Gong P.(2016) Human Genomics 10(Suppl 2):20.

SeqAssist: A novel toolkit for preliminary analysis of next-generation sequencing data

Peng Y., Maxwell A.S., Barker N.D., Laird J.G., Kennedy A.J., Wang N., Zhang C.Y., and Gong P. (2014) BMC Bioinformatics 15 (Suppl 11): S10

Synthetic Biology

M13 bacteriophage production for large-scale applications

Christopher M. Warner, Natalie D Barker, Seung-Wuk Lee, Edward J Perkins (2014) Bioprocess and Biosystems Engineering. 37 (10):2067–2072. doi: 10.1007/s00449-014-1184-7

Computational modeling of bacteriophage self-assembly during formation of hierarchical Structures

Christopher M Warner, Olexandr Isayev, Aimee R. Poda, Michael F. Cuddy, Wayne D Hodo, Seung-Wuk Lee, Edward J Perkins (2015) MRS Proceedings 12. doi: 10.1557/opl.2015.428

M13 Bacteriophage Biolaminates for Nanomaterials with Improved Stiffness

Christopher M Warner, Amitabh Ghoshal, A., Michael Cuddy, Aimee R Poda, Natalie D Barker, Daniel Morse, Seung-Wuk Lee, Edward J Perkins (2015) MRS Proceedings 1722. doi:10.1557/opl.2015.603

Genetically tunable M13 phage films utilizing evaporating droplets

Erik Alberts, Christopher M Warner, Efithia Barnes, Kevin Pilkiewicz, Edward Perkins, Aimee Poda (2018) Colloids and Surfaces B: Biointerfaces 161, 210-218, 2018

Production of tunable nanomaterials using hierarchically assembled bacteriophages

Ju Hun Lee, Christopher M Warner, Hyo-Eon Jin, Eftihia Barnes, Aimee R Poda, Edward J Perkins, Seung-Wuk Lee (2017) Nat. Protocols. 12(9). doi.org/10.1038/nprot.2017.085

Ethical principles for the use of human cellular biotechnologies

Wolpe, P.R. and Rommelfanger, K.S., and the Drafting and Reviewing Delegates of the BEINGS Working Groups 2017. Nature biotechnology, 35(11), p.1050. doi:10.1038/nbt.4007

Photoinduced Metallic Particle Growth on Single Crystal Relaxor Ferroelectric Strontium Barium Niobate

Eftihia Barnes, Erik M. Alberts, L Christopher Mimun, Jonathon A Brame, Christopher M Warner, Ashley R. Harmon, and Aimee R. Poda The Journal of Physical Chemistry C Just Accepted Manuscript DOI: 10.1021/acs.jpcc.8b00316

Toxicology

Conserved toxic responses across divergent phylogenetic lineages: A Meta-analysis of the neurotoxic effects of RDX among multiple species using toxicogenomics

Natalia Garcia-Reyero, Tanwir Habib, Medhir Pirooznia, Kurt Gust, Ping Gong, Christopher M. Warner, Mitchel Wilbanks, Edward Perkins (2011) Ecotoxicology, 20(3) 580-94.

A systems toxicology approach to elucidate the mechanisms involved in RDX species-specific sensitivity

Christopher M. Warner, Kurt Gust, Jaccob Stanley, Tanwir Habib,Mitchell Wilbanks, Natalia Garcia-Reyero, Edward Perkins (2012) Environ Sci Technol. 2012 Jul 17;46(14):7790-8.

Earthworm toxicogenomics: A renewed genome-wide quest for novel biomarkers and mechanistic insights

Gong P. and Perkins E.P. (2016) Applied Soil Ecology 104: 12-24.

Predicting chemical bioavailability using microarray gene expression data and regression modeling: A tale of three explosive compounds

Gong P., Nan X., Barker N.D., Boyd R.E., Chen Y., Wilkins D., Johnson D.R., Suedel B.C., and Perkins E.J. (2016): BMC Genomics 17:205